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Knowledge base
Overview
Overview / Welcome
5
Is the Open Science Grid for You?
Registration and Login for OSG Connect
Policies for Using OSG via OSG Connect Submit Servers
Acknowledging the Open Science Grid
OSG Accounting (GRACC)
Usage Accounting
0
Getting Started on OSG Connect
Set Up Your Account
2
Generate SSH Keys and Activate Your OSG Login
Join and Use a Project in OSG Connect
Learn to Submit HTCondor Jobs
5
OSG Connect Quickstart
Easily Submit Multiple Jobs
The "tutorial" Command
Troubleshooting Condor errors
Finding OSG Locations
Data Management
6
Data Management and Policies
Use scp To Transfer Files To and From OSG Connect
Transfer Input Files Up To 100MB In Size
Transfer Input Files >100MB In Size
Transfer Large Input and Output Files >1GB In Size
See all 6 articles
Using Software on OSG Connect
8
Using Software In OSG Connect
Compiling Software for OSG Connect
Accessing Software using Distributed Environment Modules
Docker and Singularity Containers
Available Containers List
See all 8 articles
Scaling Up, Troubleshooting, and Automated Workflows
2
Scaling Up after Success with Test Jobs
Use Pegasus to Manage Workflows on OSG Connect
Choosing Resources for Jobs
5
Steer Your Jobs with HTCondor Job Requirements
GPU Jobs
Large Memory Jobs
Multicore Jobs
OpenMPI Jobs
Software Examples for OSG
Python
2
Run Python Scripts on OSG
Scaling Up With HTCondor’s Queue Command
R
3
Run R scripts on OSG
Scaling up compute resources
Use External Packages in your R Jobs
Bioinformatics
1
Running a BLAST workflow
Drug Discovery
1
Running a Molecule Docking Job with AutoDock Vina
Quantum Chemistry
0
Machine Learning
1
Working with Tensorflow, GPUs, and containers
MATLAB Runtime
1
Basics of compiled MATLAB applications - Hello World example
FreeSurfer
1
Introduction to FreeSurfer on OSG
Julia
1
Using Julia on the OSG
Additional Support & Training
Education and Training
3
Annual, Week-Long OSG User School
Previous Training Events
Past Software Carpentry-OSG Workshops
Additional Resources
2
Contacting the OSG
Frequently Asked Questions
HPC Administration
OSG for HPC Administrators
2
Submit Node Flocking to OSG
Running OSG jobs on XSEDE