Overview

In this section, we will learn how to quickly submit multiple jobs simultaneously using HTCondor and we will visualize where these jobs run so we can get an idea of where and jobs are distributed on the Open Science Grid.

Gathering network information from the OSG

Now to create a submit file that will run in the OSG!

  1. Use the tutorial command to download the job submission files: tutorial osg-locations.
  2. Change into the scaling-up directory with cd osg-locations.

Hostname fetching code

The following Python script finds the ClassAd of the machine it's running on and finds a network identity that can be used to perform lookups: file

#!/bin/env python

import re
import os
import socket

machine_ad_file_name = os.getenv('_CONDOR_MACHINE_AD')
try:
    machine_ad_file = open(machine_ad_file_name, 'r')
    machine_ad = machine_ad_file.read()
    machine_ad_file.close()
except TypeError:
    print socket.getfqdn()
    exit(1)

try:
    print re.search(r'GLIDEIN_Gatekeeper = "(.*):\d*/jobmanager-\w*"', machine_ad, re.MULTILINE).group(1)
except AttributeError:
    try:
        print re.search(r'GLIDEIN_Gatekeeper = "(\S+) \S+:9619"', machine_ad, re.MULTILINE).group(1)
    except AttributeError:
        exit(1)

You will be using location-wrapper.sh as your executable and wn-geoip.tar.gz as an input file.

The submit file for this job, scalingup.submit, is setup to specify these files and submit fifty jobs simultaneously. It also uses the job's process value to create unique output, error and log files for each of the job.

$ cat scalingup.submit
# We need the job to run our executable script, with the
#  input.txt filename as an argument, and to transfer the
#  relevant input and output files:
executable = location_wrapper.sh
transfer_input_files = wn-geoip.tar.gz

# We can specify unique filenames for each job by using
#  the job's 'process' value.
error = job.$(Process).error
output = job.$(Process).output
log = job.$(Process).log

# The below are good base requirements for first testing jobs on OSG, 
#  if you don't have a good idea of memory and disk usage.
request_cpus = 1
request_memory = 1 GB
request_disk = 1 GB

# Queue fifty jobs with the above specifications.
queue 50

Submit this job using the condor_submit command:

console $ condor_submit scalingup.submit

Wait for the results. Remember, you can use watch condor_q to monitor the status of your jobs.

Collating your results

Now that you have your results, it's time to summarize them. Rather than inspecting each output file individually, you can use the cat command to print the results from all of your output files at once. If all of your output files have the format job.#.output (e.g., job.10.output), your command will look something like this:

$ cat job.*.output

The * is a wildcard so the above cat command runs on all files that start with location- and end in .out. Additionally, you can use cat in combination with the sort and uniq commands to print only the unique results:

$ cat job.*.output | sort | uniq

Mapping your results

To visualize the locations of the machines that your jobs ran on, you will be using http://www.mapcustomizer.com/. Copy and paste the collated results into the text box that pops up when clicking on the 'Bulk Entry' button on the right-hand side. Where did your jobs run?

 

This page was updated on Nov 11, 2019 at 23:00 from tutorials/tutorial-osg-locations/README.md.